Accounts & Records under the CGST Act: Why "The Portal Will Show It Anyway" Is a Dangerous Assumption



A quiet but consequential shift has taken place in GST practice: many taxpayers have started treating the GST portal - GSTR-1, GSTR-2B, GSTR-3B, the electronic credit and cash ledgers as their real books of account. It isn't. The portal is a reporting interface; the actual legal foundation of self-assessment sits in the accounts and records a taxpayer is required to maintain under Sections 35 and 36 of the CGST Act, 2017, read with Rules 56, 57, and 58.

Why This Distinction Matters

The Supreme Court settled this question decisively in Bharti Airtel Ltd. (2021), holding that a taxpayer cannot rely wholly on auto-generated portal information for self-assessment. The primary source for determining input tax credit eligibility and output tax liability is the taxpayer's own agreements, invoices, challans, receipts, and books of account maintained manually or electronically, not the common portal, which is merely a facilitator for feeding and retrieving that information. In practical terms: if your books and your portal figures diverge, it's the books that carry legal weight in a dispute, not the portal snapshot.

Accounts and Records under the CGST Act: Why  The Portal Will Show It Anyway  Is a Dangerous Assumption

What Section 35 Actually Requires

Every registered person must maintain true and correct accounts, at the principal place of business named on the registration certificate, covering: production/manufacture of goods, inward and outward supplies, stock, input tax credit availed, and output tax payable and paid. Where a business operates from multiple registered locations, each location's accounts must be kept there, though electronic records are permitted, provided they remain accessible at every such location (not necessarily physically stored there, per Rule 56(16)).

The Retention Clock: 72 Months, Not "Until You File"

Section 36 requires records to be retained for six years (72 months) from the due date of the annual return for the relevant year calculated from the due date, not from actual filing or the transaction date itself. Where the taxpayer is party to an ongoing appeal, revision, tribunal proceeding, or investigation, records relevant to that dispute must be kept until one year after final disposal, or until the ordinary 72-month period expires, whichever is later. A common and costly mistake: destroying records tied to a pending dispute simply because the standard 6-year window has technically lapsed.

Beyond the Basics: Stock, Production, Advances, and Tax Liability Registers

Rule 56 layers on several specific registers beyond the general Section 35 requirement:

  • Stock accounts (Rule 56(2)): opening/closing balances, receipts, supplies, and importantly goods lost, stolen, destroyed, written off, or given away as gifts/samples, which directly feeds into the ITC reversal requirement under Section 17(5)(h).
  • Production accounts (Rule 56(12)): monthly quantitative records for manufacturers, linking raw material consumption to output, waste, and by-products.
  • Advance accounts (Rule 56(3)): separately tracking advances received/paid and their adjustment relevant to time-of-supply provisions under Sections 12–13.
  • Tax liability records (Rule 56(4)): a register of tax invoices, credit/debit notes, and delivery challans issued or received in each tax period.
  • Supplier/recipient/storage particulars (Rule 56(5)): names, addresses, and storage premises critical when goods sit with transporters, warehouse operators, or third parties.
 

Sector-specific overlays also apply: service providers (Rule 56(13)), works contractors (contract-wise accounts under Rule 56(14)), and agents (principal-wise records under Rule 56(11)) each carry tailored recordkeeping obligations.

The Trap: Goods at an Undeclared Premises

Rule 56(6) is one of the sharpest provisions in this framework. If taxable goods are found at premises not declared under Rule 56(5), without valid supporting documents, the proper officer can treat those goods as if they had already been supplied, triggering a deemed-supply tax demand under Section 35(6). Note the conjunctive test: it isn't merely an undeclared address that triggers this, but the combination of an undeclared location and the absence of valid documents. Properly documented goods at an undeclared premises are a separate (and lesser) compliance lapse, not automatically a deemed supply.

Due Process Still Applies - Even Here

Two Allahabad High Court rulings - Metenere Ltd. (2020) and Maa Mahamaya Alloys (2023) make clear that even where Section 35(6)/Rule 56(6) applies, the tax authority cannot skip straight to confiscation or penalty. Quantification must still follow the formal demand procedure under Sections 73, 74, or 74A (as applicable to the relevant period), including a proper show-cause notice and reasoned order. In Metenere, the Court struck down confiscation and a penalty exceeding ₹10,000 precisely because this quantification exercise had been skipped.

Penalties for Recordkeeping Failures

Failure to keep, maintain, or retain required books attracts a penalty under Section 122(1)(xvi), the higher of ₹10,000 or a prescribed amount linked to the underlying default (tax evaded, ITC irregularity, etc.). The residual penalty under Section 125 (up to ₹25,000) is meant for contraventions not otherwise covered it should not be stacked on top of a Section 122(1)(xvi) default for the same lapse, and Section 75(13) specifically guards against duplicate penalties for the same act.

 

Correcting Entries Without Losing Evidentiary Value

Rule 56(8) prohibits erasing or overwriting entries. Genuine corrections must be scored out under attestation (for manual records) or preserved as an edit/deletion log (for electronic records) — clerical-error corrections aside. This isn't bureaucratic formality; a transparent correction trail is often what distinguishes a genuine rectification from suppression in the eyes of an adjudicating officer.

Practical Takeaway for Advisors

The recurring theme across all these provisions is that accounts and records are the client's primary defense, not paperwork for its own sake. A stock shortage, an ITC claim, or goods found at a third-party location are not automatically adverse findings — they're discrepancies that a well-maintained, well-reconciled set of records can explain. Advisors should treat quarterly reconciliation between books, GSTR filings, and physical stock as a standing engagement item, not a year-end scramble  because by the time a notice under Section 73/74/74A arrives, the burden of producing that explanation falls entirely on the taxpayer.

(Reference: "Accounts & Record under CGST ACT: Compliance, Evidence & Legal Consequences" by Motiram Kanadje, Retd. Joint Commissioner, State Tax, TaxGuru, 25 September 2026, discussing Sections 35, 36, 122, and 125 of the CGST Act, 2017, Rules 56–58 of the CGST Rules, and the rulings in Bharti Airtel Ltd., Metenere Ltd., and Maa Mahamaya Alloys.)




About the Author

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As a qualified Company Secretary, I bring hands-on experience in corporate governance, regulatory compliance, and end-to-end transaction support across both private and listed company frameworks. Over the course of my professional journey, I have been actively involved in private placements, rights issues, bonus issue ... Read more

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