Next-Gen GST Process Reforms: What the 57th GST Council Meeting Recommends on Registration, Returns, Refunds, ITC and Litigation



The 57th meeting of the GST Council, held at New Delhi on 8 October 2026, recommended the omission of section 69 of the CGST Act, 2017, a prosecution threshold of ₹5 crore, system-based sanction of refunds, and a floor of ₹10,000 below which no show cause notice will be issued. No rate slab was altered. The meeting was devoted to procedure: registration, returns, refunds, input tax credit and adjudication.

Every measure discussed in this article is a recommendation. The official press release records that the decisions will be given effect through circulars, notifications and law amendments, which alone shall have the force of law. Until those instruments are issued, the existing provisions of the Act and the Rules continue to govern.

Next-Gen GST Process Reforms: What the 57th GST Council Meeting Recommends on Registration, Returns, Refunds, ITC and Litigation

Registration

Automatic registration under rule 14A of the CGST Rules, 2017, introduced on the recommendation of the 56th meeting, already covers applicants who do not intend to pass on input tax credit exceeding ₹2.5 lakh per month. The present recommendations deal with the remaining applications, where queries and rejections have largely turned on what documents an officer may ask for.

The Council has recommended a comprehensive circular, with FAQs, specifying the documents and information required for registration. FORM GST REG-01 is to be amended to provide drop boxes for selecting the prescribed documents, so that the applicant and the officer work from the same list. The portal is to carry drop-down lists, tool-tips and contextual guidance for the application.

Amendment of registration particulars. Rule 19 is to be amended so that amendments to all registration particulars, other than those relating to the principal place of business, are accepted automatically on the portal. For persons registered under rule 14A, amendments relating to the principal place of business will also be accepted automatically.

Cancellation on the taxpayer's application. Amendments to the Act and the Rules are recommended to make acceptance of FORM GST REG-16 system-driven, in two phases.

Phase

Applications accepted automatically

Condition

Phase 1

Taxpayers who have not passed on ITC exceeding ₹2.5 lakh in any month since registration; and taxpayers who have exceeded that limit but have filed the final return in FORM GSTR-10 within the specified period

All pending returns filed and all dues paid

Phase 2

All applications for cancellation; FORM GST REG-16 to be amended so that the details of FORM GSTR-10 are furnished in the application itself

All pending returns filed and all dues paid

Cancellation by the proper officer. Certain grounds of suo motu cancellation in rule 21 are to be omitted. Rules 21A and 22 are to be amended and a new rule 23A inserted, providing for system-based cancellation on non-filing of returns or non-furnishing of bank account details, and system-based revocation on subsequent compliance within the specified period. The press release does not identify which grounds in rule 21 will be omitted.

Small sellers on e-commerce platforms. A new rule 14B is recommended for small suppliers of goods through electronic commerce operators. Such a supplier may obtain registration in a State or Union Territory where it has no physical presence by declaring the operator's warehouse in that State as its principal place of business. The facility is confined to suppliers who intend to pass on ITC of not more than ₹2.5 lakh per month, excluding stock transfers between distinct persons. Registration will be granted automatically by the system, subject to conditions that are yet to be notified.

Returns

The return-related recommendations give statutory form to an alternate mechanism for correcting liability and input tax credit within the return itself, so that FORM GSTR-3B agrees with FORM GSTR-1/1A/IFF on the outward side and with FORM GSTR-2B on the inward side. The stated object is to reduce mismatch-driven demand notices and system-generated intimations.

Provision or form

Recommended change

FORM GSTR-1 / 1A / IFF

Enhancements to enable reconciliation with the details reported in FORM GSTR-3B

Rule 61(1A), new

Mechanism for correct reporting and rectification of liability in FORM GSTR-3B, aligning it with FORM GSTR-1/1A/IFF

Rule 61(1B), new

Mechanism for correct reporting and rectification of ITC in FORM GSTR-3B, aligning it with FORM GSTR-2B

Rule 60(6A), new

Invoice Management System: the recipient may accept, reject or keep pending an inward supply document for generation of FORM GSTR-2B, subject to conditions, including the period for which a credit note may be kept pending

Rule 86C, new

Electronic Credit Reversal and Reclaim Statement on the portal

Rule 86D, new

Electronic Statement of tax paid on Reverse charge basis and input tax credit claimed

FORM GST DRC-03

Declaration of the underlying invoice for which payment is made

A circular is also to be issued on the manner of reporting ITC and its reversal in FORM GSTR-3B in the context of the Invoice Management System and the two electronic statements.

The Council recommended that the alternate mechanism be brought into force from the return for April 2027. The revised mechanism is to be placed in the public domain for a time-bound consultation, and the Union Finance Minister has been authorised to approve modifications arising from stakeholder feedback. The design may therefore change before notification.

Separately, sections 16, 37 and 39 of the CGST Act are to be amended to align the provisions on the statement of outward supplies and the return with the time limit for availing credit under section 16(4).

Annual Return Quarterly Payment (ARQP). The Council approved, in principle, a concept note for an optional ARQP scheme. It is intended for taxpayers with aggregate turnover of ₹5 crore or less in the preceding financial year who are engaged exclusively in supplies to unregistered persons. The press release gives no form, procedure or commencement date; the scheme remains at the concept stage.

Refunds

Amendments to section 54 of the CGST Act and the corresponding Rules are recommended to provide for system-based processing and sanction of three classes of refund claim: excess balance in the electronic cash ledger, zero-rated supplies, and inverted duty structure. Implementation is in two phases.

Phase

Measure

Phase 1

Full refund of excess balance in the electronic cash ledger sanctioned automatically by the system, without officer intervention

Phase 1

Time limit for acknowledgement or deficiency memo reduced from 15 days to 10 days, with deemed acknowledgement by the system where neither is issued within 10 days of the application

Phase 1

For zero-rated supplies and inverted duty structure, 90% of the amount claimed sanctioned provisionally and automatically, on the basis of system-based risk evaluation

Phase 2

System-based automated acknowledgement on verification of the application by the system

Phase 2

In such acknowledged cases, automated sanction of the full claim for zero-rated supplies, after adjusting pending dues and subject to risk evaluation

The automated sanction of the full claim in Phase 2 is confined to zero-rated supplies. The press release does not extend it to inverted duty structure claims, nor does it state the commencement date of either phase.

Three further changes bear directly on the quantum and eligibility of refund. FORM GST RFD-01 is to capture details in a system-readable format, dispensing with scanned uploads for zero-rated and inverted duty structure claims. Rule 89(4)(C) is to be amended to remove the restriction that caps the turnover of zero-rated supply of goods at 1.5 times the value of like goods supplied domestically. An Explanation is to be added to section 54(14) clarifying that the threshold of ₹1,000 applies to the total refund amount under CGST, SGST/UTGST and IGST taken together.

On interest on refund of pre-deposit paid for filing appeals, section 115 is to be recast as a standalone provision specifying the applicable rate, and a circular is to follow.

Input Tax Credit

Blocked credits under section 17(5). The Council recommended amendment of section 17(5) of the CGST Act to remove the restriction on availment of credit, inter alia, on the following supplies: outdoor catering; health insurance and life insurance; telecommunication towers; pipelines laid outside the factory premises; free samples; and goods destroyed or written off on expiry of shelf life as required by law.

The expression used in the press release is “inter alia”, and the summary published by GSTN carries the caveat that exceptions and conditions apply. The exact scope of each relaxation will be known only from the text of the amending provision. Telecommunication towers and pipelines laid outside the factory premises are at present excluded from “plant and machinery” by the Explanation to section 17, and free samples fall within clause (h) of section 17(5); corresponding amendments to those provisions will be required.

Refund of accumulated credit. Clause (ii) of the proviso to section 54(3) and the Rules are to be amended to widen the categories of credit eligible for refund.

Credit on

Refund category

Applies to ITC availed

Input services

Inverted duty structure

On or after 1 November 2026

Capital goods

Zero-rated supplies and inverted duty structure

On or after 1 April 2027, with the refund spread over 60 months

Blocking of credit under rule 86A. Rule 86A is to be amended to enable a taxpayer to file an objection against the blocking of any amount in the electronic credit ledger, and to be heard in person before the proper officer decides the objection. The rule at present contains no such procedure.

Demands, Penalties and Appeals

Sections 73, 74 and 74A of the CGST Act are to be amended, and section 125 and the pre-deposit provisos revised, as set out below.

Subject

Present position

Recommended position

Threshold for show cause notice

No monetary floor

No notice where the tax involved (CGST + SGST + IGST + Cess) is less than ₹10,000

Pending matters below the threshold

Proceed in the ordinary course

Notices and appeals pending on the date the provision comes into force to be decided as if the threshold had been in force when the notice was issued

Voluntary payment

Amount paid is described as penalty

Penalty deemed to be a “charge” where the full tax is voluntarily paid with interest and penalty within the specified time limit

Payment after adjudication, non-fraud cases

Penalty of 10% of the tax, or ₹10,000, whichever is higher

Penalty of 5% where tax and interest are discharged within 30 days of the order under section 73, or 60 days under section 74A

Minimum penalty, non-fraud cases

₹10,000

Removed

General penalty, section 125

Up to ₹25,000

Up to ₹10,000

Pre-deposit where the order involves only penalty, sections 107(6) and 112(8)

Computed on the penalty, without a ceiling

Upper limit of ₹40 crore (₹20 crore under CGST and ₹20 crore under SGST/UTGST)

 

The press release does not explain the legal consequence of redesignating a penalty as a “charge”. The purpose appears to be that a taxpayer who pays voluntarily within time is not recorded as having been penalised. Whether the change carries any effect beyond nomenclature will depend on the language of the amendment.

A circular is also recommended to lay down guidelines for officers on the quality and timely issuance of demand notices and of adjudication and appeal orders, on invoking fraud, wilful misstatement or suppression of facts only on the merits of each case, and on adherence to the principles of natural justice, including the conduct of personal hearings.

One recommendation runs in the opposite direction. A validation clause is proposed in the CGST Act to validate notices that have been held invalid by courts on the ground of having been issued for multiple financial years. Taxpayers who have obtained relief on that ground should follow the text of this clause closely.

Arrest, Prosecution, Late Fee and Goods in Transit

Arrest. The Council recommended complete withdrawal of the power of arrest under GST by omission of section 69 of the CGST Act. This requires an amendment of the statute; until it is enacted and brought into force, section 69 remains operative.

Prosecution. The monetary threshold for prosecution is to be raised from ₹1 crore to ₹5 crore. Section 132(1) is to be narrowed in four respects: clause (i) is to be omitted; the words “evades tax” are to be deleted from clause (e); the words “or in any other manner deals with” are to be deleted from clause (h); and clause (c) is to be confined to fraudulent availment of input tax credit without receipt of goods or services, or without an invoice or bill. The quantum of punishment for the various offences under section 132 is also to be rationalised, the details of which are not given.

Late fee. Waiver of late fee is recommended on delayed filing of the return under section 39(1) for taxpayers with annual turnover of up to ₹5 crore in the preceding financial year, where the delayed return is filed by the end of the month in which it was due. The recommendation is confined to late fee. The press release makes no reference to interest under section 50 on tax paid after the due date.

Interception of goods in transit. Sections 68, 129 and 130 are to be amended to provide as follows.

Aspect

Recommended position

Basis of interception

Only on specific intelligence, with the authorisation of an officer not below the rank of Joint Commissioner

Jurisdiction

Inspection, detention or seizure only where the supplier or the recipient is located or registered in the State of interception; no interception in transit States

Exception

Where no e-way bill has been generated, or the conveyance carries no document showing the origin or destination of the goods, inspection, detention or seizure is permitted irrespective of jurisdiction

Confiscation

Section 130 not to apply to goods or conveyances in transit

Timelines

Only three of the recommendations carry a date in the press release.

Recommendation

Date indicated

Refund of accumulated ITC on input services, inverted duty structure

ITC availed on or after 1 November 2026

Alternate mechanism for amendment of liability and ITC in the return

Return for April 2027, after public consultation

Refund of accumulated ITC on capital goods

ITC availed on or after 1 April 2027

 

For the remainder, including the omission of section 69, the revised prosecution threshold, the section 17(5) relaxations, the ₹10,000 threshold for notices, the reduced penalties, the late fee waiver and both phases of refund automation, no commencement date has been announced. Measures requiring amendment of the CGST Act will need legislation by Parliament and corresponding amendment of the State GST Acts. Measures resting on the Rules, forms or circulars can be notified earlier.

Practitioner's Observations

The distinction between a recommendation and the law matters most for input tax credit. Credit on health insurance, life insurance, outdoor catering or free samples cannot be availed in a current return on the strength of the press release. Section 17(5) stands as it is until amended, and credit availed prematurely will attract reversal with interest.

The cut-off dates for refund of accumulated credit are tied to the date of availment of the credit and not to the date of the refund application. On the wording of the recommendation, credit on input services availed before 1 November 2026 and credit on capital goods availed before 1 April 2027 falls outside the relaxation. Exporters and manufacturers under an inverted duty structure who are planning capital expenditure will need to read the amended proviso to section 54(3) before drawing any conclusion on timing.

The ₹10,000 threshold is recommended to apply to notices and appeals pending on the date it comes into force. Small demands under contest may therefore lapse by operation of law once the amendment is enacted, which is relevant in deciding whether such matters merit further cost.

The late fee waiver for taxpayers with turnover of up to ₹5 crore is not an extension of the due date. Interest on delayed payment of tax is a separate statutory charge, and the consequence of a supplier's delayed filing for the recipient's FORM GSTR-2B is unaffected.

Two recommendations add to compliance. E-invoicing is to be extended, for taxpayers with aggregate annual turnover of ₹5 crore and above, to domestic supplies received from unregistered persons on which tax is payable under reverse charge, and to import of services. The validation clause for multi-year notices may revive demands that taxpayers regard as concluded.

The return correction mechanism is to be published for consultation before it is notified. Since it will determine how FORM GSTR-3B is reconciled from April 2027, the draft deserves a careful response from the profession and from trade bodies while changes are still possible.

Disclaimer: This article is based on the press release on the recommendations of the 57th meeting of the GST Council and is intended for general information only. The recommendations will take effect only through the relevant notifications, circulars and amendments to law, the text of which may differ from the press release. The article does not constitute professional advice or an opinion. Readers should refer to the notified provisions and obtain specific advice before acting on any matter discussed here.


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About the Author

Chartered Accountant

About the Author I am a Chartered Accountant based in New Delhi. Before I qualified, I spent close to twelve years working on the operational side of accounts and compliance closing books, reconciling returns, and handling the everyday filings that keep a business on the right side of the law. I do not describe those ... Read more

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