GST Annual Returns in GSTR 9 and 9C: Discussion on major amendments FY 2024-25 onwards



Quick Summary
The CBIC has introduced significant amendments to GSTR 9 and GSTR 9C for the financial year 2024-25 onwards. Small taxpayers with an annual turnover under ₹2 crore are now permanently exempt from filing GSTR 9. Key changes include new tables for reporting Input Tax Credit (ITC), detailed rule-wise reporting of ITC reversals, and enhanced disclosures for imports. Auto-population of figures will now also consider amendments made through GSTR 1A.

The CBIC, vide Notification No: 13/2025-CT and Notification No: 15/2025-CT both dated 17th September, 2025, has made several significant amendments to the annual Returns in Forms GSTR 9 and GSTR 9C. These changes are applicable w.e.f. FY 2024-25. This notification was followed by the following:

a. FAQs dt 15.1.25

b. Updated GSTR 9 and 9C on the portal.

A quick summary of major changes is as under:

GSTR 9 and 9C Amendments FY 2024-25: Key Changes

Permanent relief to small taxpayers

Vide notification No:15/2025-CT dt 17.09.25, permanent exemption from filing GSTR 9 has been granted to taxpayers having aggregate turnover less than 2 crores. This extends the relief provided in FY 2023-24 [NN 14/2024-CT dt 10.07.2024]

Filing of all GSTR 1 and GSTR 3B for the financial year is mandatory

GSTR 9 /9C unlocks only after all GSTR 1 and GSTR 3B of the financial year are filed.

Introduction of Tables 6A1 and 6A2

  • 6A1 introduced this year pertains to ITC of preceding FY other than ITC reclaimed under Rule 37 and 37A, which is included in Table 6A [which pertains to total ITC availed through GSTR 3B]
  • 6A2=Net ITC for the financial year [after excluding 6A1]

Changes in the reporting of reclaimed ITC

  • First time claim to be reported in Table 6B
  • Reversal to be reported in Table 7
  • Reclaimed ITC to be reported in Table 6H
  • ITC reversed due to Rule 37/37A in earlier years and now reclaimed to be reported in Table 6H.
  • Any other ITC reversed in earlier year but claimed in current year to be reported in Table 6A(1).

Expansion of Table 6M

  • Wordings modified the same is no longer a residual cell.
  • Earlier it was "any other ITC availed but not specified above". However from FY 2024-25 the wordings of Table 6M are "ITC availed through ITC-01, ITC-02 and ITC-02A."
  • Table 6M will now capture ITC availed through ITC-01 [credit on new registration] and ITC-02/02A [credit transfer on merger/demerger, business transfer]. This brings greater transparency in ITC reporting.

Rule-wise reporting of ITC Reversals

· Consolidated reporting of ITC reversals, as done earlier, to be replaced by Rule-wise reporting of ITC reversals under

(i) Rule 37 Non-payment of supplier within 180 days

(ii) 37A Suppliers failed to file GSTR 3B

(iii) 38 Reversal for banking companies [50% ITC option]

(iv) 42 Common ITC apportionment for taxable & exempt supplies

(v) 43 Capital goods ITC reversal

(vi) Sec. 17(5] Blocked credit

 

New disclosures for import

  • Table 8H1 introduced for IGST credits on import of goods claimed in next financial year.
  • Separate reporting of deferred ITC and IGST credit on imports claimed in the current year

Auto population figures

Figures in tables 4,5, 6, 8 & 9 are autopopulated based on returns already filed.

From FY 2024-25 onwards amendments made through GSTR 1A will also be considered in Tables 4 & 5.

 

Other changes

  • Table 9-Enhanced reconciliation between tax liability and tax paid, with clearer splits [Cash vs ITC] and stricter validations.
  • Tables 10,11, 12 & 13 have undergone cosmetic changes
  • Tables 12 & 13 are now mandatory -ITC of FY 2024-25 claimed and reversed in GSTR 3B of FY 2025-26 [before 30th November, 2025]
  • Auto population of late fees under Sec. 47(2) of the CGST Act, 2017.

Amendments in GSTR 9C

A new line item requiring separate disclosure of supplies where tax is payable by E-Commerce Operator.

Hence, annual returns FY 2024-25 onwards are not just routine compliance returns. They are macro-level reporting requiring accurate, rule-wise and period-wise documentation. Meticulous record keeping throughout the year is the only way to ensure smooth filing and accurate reconciliation.

FAQ :

Taxpayers with an aggregate turnover of less than ₹2 crore are permanently exempt from filing GSTR 9 from FY 2024-25 onwards.

New tables 6A1 and 6A2 have been introduced. Table 6A1 pertains to ITC of the preceding financial year (excluding ITC reclaimed under Rule 37 and 37A), while 6A2 represents the net ITC for the financial year after excluding 6A1.

First-time claims of reclaimed ITC are reported in Table 6B, reversals in Table 7, and reclaimed ITC in Table 6H. ITC reversed due to Rule 37/37A in earlier years and now reclaimed is reported in Table 6H, while other ITC reversed previously but claimed currently goes into Table 6A(1).

Consolidated reporting of ITC reversals is replaced by rule-wise reporting. This includes reversals under Rule 37 (non-payment within 180 days), Rule 37A (suppliers failing to file GSTR 3B), Rule 38 (banking companies), Rule 42 (common ITC apportionment), Rule 43 (capital goods), and Section 17(5) (blocked credit).

Yes, a new Table 8H1 has been introduced for IGST credits on the import of goods claimed in the next financial year. This allows for separate reporting of deferred ITC and IGST credit on imports claimed in the current year.

From FY 2024-25 onwards, amendments made through GSTR 1A will also be considered in the auto-populated figures for Tables 4 and 5 of GSTR 9.


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