GSTN Clarification on Handling Inadvertently Rejected Records on IMS

Last updated: 20 June 2025


Quick Summary
The Goods and Services Tax Network (GSTN) has issued new guidelines to help taxpayers manage invoices, debit notes, and credit notes that were accidentally rejected by the Invoice Matching System (IMS). These clarifications explain how recipients can claim Input Tax Credit (ITC) for wrongly rejected invoices and how to reverse ITC for rejected credit notes, even after filing their GSTR-3B. The advice also covers the implications for suppliers' liabilities when records are re-submitted.

The Goods and Services Tax Network (GSTN) has issued a set of clarifications aimed at resolving taxpayer concerns regarding the treatment of inadvertently rejected invoices, debit notes, and credit notes on the newly introduced Invoice Matching System (IMS). The guidelines address the process for availing Input Tax Credit (ITC), reversing ITC on credit notes, and implications on supplier liability in such scenarios.

GSTN Clarification on Handling Inadvertently Rejected Records on IMS

Official copy of the advisory is as follows

Handling of Inadvertently Rejected records on IMS

Question 1: How can a recipient avail ITC of wrongly rejected Invoices/ Debit notes/ECO-Documents in IMS as corresponding GSTR-3B of same tax period was also filed by recipient?

Answer: In such cases recipient can request to the corresponding supplier to report the same record (without any change) in same return period's GSTR-1A or respective amendment table of subsequent GSTR-1/IFF. Thus, recipient can avail the ITC basis on amended record by accepting such record on IMS and recomputing GSTR-2B on IMS. Here the recipient will get ITC of complete amended value as original record was rejected by the recipient.

However, recipient will be able to take ITC for the again furnished document by the supplier, as stated above, only in the GSTR-2B of the concerned tax-period.

Question 2: If any original record is rejected by the recipient and supplier furnishes the same record in GSTR-1A of same tax period or in the amendment table of GSTR-1/IFF of subsequent period, till the specified time limit, then what impact it will have on supplier's liability?

Answer: In case supplier had furnished an original record in GSTR-1/IFF but the same record was rejected wrongly by the recipient in IMS. In such cases supplier on noticing the same in the supplier's view of IMS dashboard or on request of recipient, may furnish the same record again (without any change) in GSTR-1A of same tax period or in the amendment table of GSTR-1/IFF in any subsequent period, till the specified time limit, then the liability of supplier will not increase. As amendment table take delta value only. Thus, in present case of same values, differential liability increase will be zero.

Question 3: As a recipient taxpayer, how to reverse ITC of wrongly rejected Credit note in IMS as the corresponding GSTR-3B has already been filed?

Answer: In such cases recipient can request the concerned supplier to furnish the same Credit note (CN) without any change in the same return period's GSTR-1A or in amendment table of subsequent period's GSTR-1/IFF. Now recipient can reverse the availed ITC based on the amended CN by accepting the CN on IMS. Hence, the recipient's ITC will get reduced with complete amended value, as soon as the recipient recomputes GSTR-2B on IMS. The reduced value is same as that of the value of original CN as in this case the complete original CN was rejected by the recipient.

Question 4: If any original Credit note was rejected by the recipient and supplier furnishes the same credit note in GSTR-1A of same tax period or in the amendment table of GSTR-1/IFF of any future tax-period, till the specified time limit, then what impact it will have on supplier's liability?

Answer: At first instant the supplier's liability will be added back in the open GSTR-3B return, because of original credit note rejection by the recipient. However, as the supplier furnishes the same credit note in GSTR-1A of same tax period or in amendment table of GSTR-1/IFF in any subsequent period, supplier's liability for this amendment will get reduced again corresponding to the value of amended CN (which in this case is same as original). Thus, net effect on liability of supplier will be only once.

FAQ :

The recipient should ask the supplier to resubmit the same invoice (without changes) via GSTR-1A for the same tax period or through the amendment table of a subsequent GSTR-1/IFF. Once accepted on IMS and GSTR-2B is recomputed, the recipient can claim ITC for the amended value.

If the supplier resubmits the same invoice via GSTR-1A or the amendment table of a subsequent GSTR-1/IFF within the time limit, the supplier's liability will not increase. This is because the amendment table only accounts for the delta value, resulting in zero differential liability increase.

The recipient needs to request the supplier to resubmit the same credit note (without changes) via GSTR-1A for the same period or the amendment table of a subsequent GSTR-1/IFF. After accepting the credit note on IMS and recomputing GSTR-2B, the recipient's ITC will be reduced by the full amended value.

Initially, the supplier's liability might be added back in their GSTR-3B due to the rejection. However, when the supplier resubmits the same credit note via GSTR-1A or the amendment table of a subsequent GSTR-1/IFF, their liability will be reduced accordingly. The net effect on the supplier's liability will be recorded only once.




News posted by

Finance news reporter covering taxation, GST, income tax, business compliance, and economy updates. I simplify complex financial topics into easy-to-understand articles for professionals, taxpayers, and business owners on leading finance and tax platforms.

Click here to Login and post comments    OR



More »


Popular News





CCI Pro



Company
Featured 16 July 2026
Semi Qualified Company Secretary

Vakilsearch.com

Chennai

CS

View Details
Company
ARTICLESHIP 28 July 2026
Article/Intern/Semi-Qualified/Fresher B.Com

VNSS & Co

Mumbai

Others

View Details
Company
ARTICLESHIP 11 July 2026
Article

SNCO

Mumbai

CA Inter

View Details
Company
ARTICLESHIP 16 July 2026
Article Assistant

Sahil Agarwal & Company

Mumbai

CA Inter

View Details
Company
23 July 2026
Senior Accountant

Felicity Adobe LLP

Bengaluru

CA Inter

View Details
Company
06 July 2026
Senior Accountant

Arvindkumar Maniar & Co.

Rajkot

CA

View Details
Company
20 July 2026
Senior GST Executive

Chandak Agarwal & Co

Mumbai

Graduate (Any)

View Details
Company
ARTICLESHIP 10 July 2026
Article Assistant

N S Gokhale & Co

Thane

CA Inter

View Details