Finance Ministry to Examine Uniform GST Treatment for Micronutrient Fertilisers

Last updated: 17 September 2025


Quick Summary
The Indian Finance Ministry has agreed to review the Indian Micro-Fertilisers Manufacturers Association's (IMMA) request for a single GST rate on all micronutrient fertilisers. This follows concerns about the current 'inverted duty structure' where input taxes are higher than output taxes. While acknowledging the issue, officials stated that a uniform rate would be considered in consultation with the Agriculture Ministry. The ministry also committed to fast-tracking refunds for the existing inverted duty structure, with a notification expected alongside GST 2.0's rollout.

The Union Finance Ministry has assured the Indian Micro-Fertilizers Manufacturers Association (IMMA) that it will consider the industry's request for a uniform GST rate on all micronutrient fertilisers covered under the Fertiliser Control Order (FCO).

The assurance came during a meeting between IMMA representatives and senior officials of the CBIC in New Delhi on September 12. Ministry officials clarified that the matter would be reviewed in consultation with the Agriculture Ministry before a decision is taken.

Finance Ministry to Examine Uniform GST Treatment for Micronutrient Fertilisers

Industry Seeks 5% GST for All Fertilisers

The IMMA urged the government to keep all fertilisers, whether subsidised or non-subsidised, inorganic, organic or mixed, including micronutrient fertilisers and mixtures under the 5% GST slab. Currently, multiple GST rates apply, creating what the industry calls an "inverted duty structure."

Officials acknowledged this concern but stated that the inverted duty problem will continue as long as multiple GST rates remain in force. On the issue of refunds for stock-in-trade, they clarified that such refunds are not permissible under existing law and dealers are expected to adjust input tax against future GST liabilities.

Refunds for Inverted Duty

Responding to manufacturers' demands, officials agreed to fast-track refunds for the inverted duty structure, where input taxes are levied at 18% while output supplies are taxed at just 5%. They assured the industry that a speedy refund notification would be issued alongside the rollout of GST 2.0 from September 22.

The IMMA pressed for a time-bound refund mechanism, proposing a 30-day service level agreement to ensure working capital efficiency for fertiliser manufacturers.

Concerns Over Higher GST Slabs

Industry representatives also cautioned the government against shifting fertilisers into the 18% GST bracket, warning that such a move would raise farm-gate prices, block working capital and ultimately hurt both farmers and fertiliser makers.

In response, ministry officials noted that the matter would be taken up during GST 2.0 deliberations, but stopped short of confirming any rate change.

Industry Commitment to Farmers

The IMMA assured officials that the industry remains committed to anti-profiteering measures. It pledged that any tax savings would be directly passed on to farmers through reduced MRP or price stability, ensuring immediate benefits once a uniform GST framework is notified.

With GST 2.0 set to launch from September 22, the coming weeks will be crucial in determining whether the fertiliser industry gets the clarity and relief it has been seeking on taxation.


The IMMA is requesting a uniform GST rate of 5% for all fertilisers, including micronutrient fertilisers and mixtures, whether subsidised or non-subsidised.

The industry claims the current multiple GST rates create an 'inverted duty structure', where input taxes are higher than output taxes, impacting working capital.

The Finance Ministry has assured the IMMA that it will consider the request for a uniform GST rate and review the matter in consultation with the Agriculture Ministry.

Officials have agreed to fast-track refunds for the inverted duty structure and assured that a speedy refund notification will be issued alongside the rollout of GST 2.0.

Industry representatives warned that shifting fertilisers to higher GST slabs, such as 18%, would increase farm-gate prices, block working capital, and negatively affect farmers and manufacturers.

The IMMA has pledged that any tax savings resulting from a uniform GST framework will be directly passed on to farmers through reduced MRP or price stability.




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Finance news reporter covering taxation, GST, income tax, business compliance, and economy updates. I simplify complex financial topics into easy-to-understand articles for professionals, taxpayers, and business owners on leading finance and tax platforms.

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