Late fee for gstr-1

The GSTR-1 for Jan.- Mar. quarter 2018 was filed late by two days. The late fee for the same is Ra. 100.00. Now should that be deposited with GSTR-3B for Apr. 2018. The auto-filled table of late fee in GSTR-3B for Apr. 2018, is showing late fee for GSTR-3B for March 2018 but not of GSTR-1 for Jan- Mar. quarter 2018? Please advise.