Finance professional
775 Points
Joined June 2015
Download justification report from your login under traces and check the reasons whether it is of PAN error, short deduction or interest on late deposit etc.
If you are confident that these error are under control and doesn't affect individual employee tax liability then go and distribute the form 16 part A and part B to employees.
If error are in some few employees then distribute form 16 of remaining employees.