Need help calculating income tax by including negative incom

Hello all,

I need help filing ITR for a weird case.

I'm a salaried employee and my case is as described below.

Joined company A on March, 2013. Received joining bonus and allowances and paid tax for the same for FY2012-13.

Worked with company A for 3 months (April to June). Since I left the company within 6 months I need to repay joining bonus and allowances. But I've paid tax for them already in the previous financial year and now this money has been reduced from my salary in the form 16 given by A. 

As per the form 16 given by company A below are the details.

Tax deducted : 8328 (for the salary received between April to June around 104222.00)

Salary              : -65238 (104222 (salary) - 169460(bonus and allowances))

Worked with company B and below are the form 16 details.

Salary : 745604

Tax deducted : 74576

My query is : Is there a way I can claim back the lost tax I paid for bonus and allowances when working with company A?

Please help me on this regard and let me know if any more details are needed.

Thanks in advance!