By filling GSTR- 3B, you can take ITC of the IGST paid by you. You can claim a refund of inputs only in case of an Inverted duty structure/Excess payment of tax. So, based on the same you can proceed.
A is importer who paid igst on imported goods. Then ,A supply to C with his Expenses and gp on that imported goods. Then A filed gstr 3B for respective month. A claim ITC on imported goods as per customs entry bill and net gst cash on tax liability b paid after collect from C only during six months or any condition mentioned in the invoice. B may claim Itc as per invoice issued by A or any voucher issued by A ,on bill payment made by C ,' s base only. If any excess payment made by inverted structure A & B may claim Refund. But conditions may b fullfilled by A
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