BASIC EXEMPTION LIMIT EFFECT IN ITR-3

As such for calculation of NTI, there is NO DEFECT in the ITR 3 utility. It is working fine. You may have some income chargeable at specific rate, check schedule SI.

Thank you sir for your prompt response. But there are SI but a meger amount of Rs.10,000/- only. No special incomes as such.

File complaint under Grievance along with screen shot.

Yes Sir have already riased the griverance awaiting resolution of the same. 

Actually, we are also facing the issue with tax relief under sec 87A. Raised Grievance, waiting for upgraded version.