AIS VS GST Mismatch- FY 2025-26

I am an Amazon and Flipkart seller registered under Regular GST, and I am currently preparing my ITR for FY 2025–26. I have identified a significant mismatch between my AIS/TIS Business Receipts and GST Turnover.

AIS/TIS Business Receipts: ₹56,26,248
AIS/TIS GST Turnover: ₹33,88,927
Total Difference: ₹22,37,321

I have reviewed my Amazon and Flipkart GST Ready-to-File reports and GST returns and identified the following:

1. June–August 2025:
GSTR-1 and GSTR-3B were mistakenly filed as NIL for all three months, although actual marketplace sales during these months were ₹11,61,353.77 as per the GST Ready-to-File reports. GST on these sales was therefore not reported/paid in those months.

2. March 2026:
GST records show outward taxable supplies of ₹6,72,200.84, but this amount does not appear to be reflected in the AIS GST Turnover.

3. Remaining difference:
After considering the above two amounts, approximately ₹4.03 lakh of the overall ₹22.37 lakh difference still remains to be reconciled.

I also have the Amazon/Flipkart reports, AIS/TIS, 26AS, GSTR-1 and GSTR-3B available for verification.

Please advise me on the following:

1. What is the legally correct way to regularise the ₹11,61,353.77 omitted turnover for June–August 2025, including applicable GST and interest?
2. How should the ₹6,72,200.84 March 2026 GST turnover be reconciled with AIS?
3. How should the remaining ~₹4.03 lakh difference between AIS/194-O receipts and GST turnover be reconciled?
4. What should be the correct turnover to report in the ITR?
5. What documentation/reconciliation should I maintain in case of a future GST or Income Tax query?

I am looking for a proper transaction-wise reconciliation and a legally defensible solution rather than simply adjusting the figures

Replies (2)
Quick Summary
This discussion addresses a significant mismatch between AIS/TIS Business Receipts and GST Turnover for an Amazon/Flipkart seller preparing their ITR for FY 2025-26. The core issues involve omitted GST filings for specific months and discrepancies in how marketplace sales are reported versus GST taxable turnover. The advice provided includes legally regularising omitted turnover with interest, reconciling timing differences, and correctly reporting net GST turnover in the ITR, rather than the gross AIS figure.

To resolve the mismatch, pay tax with 18% interest under GSTR-3B for the omitted June–August 2025 sales, treat the March 2026 timing lag as a reporting delay from marketplaces, bridge the remaining ₹4.03 lakh gap via a 194-O vs. GST statement, report actual book turnover in your ITR, and archive a complete reconciliation dossier.

This is a very common challenge for marketplace sellers. Let me address each part:

WHY AIS AND GST TURNOVER ALWAYS DIFFER

For Amazon/Flipkart sellers, 194-O TDS is deducted on GROSS marketplace payment which includes returns at face value before adjustment, freight recovery, and platform commission. Your GST turnover is NET of returns and only on taxable supply value. A 30-40% gap between AIS receipts and GST turnover is completely normal.

Reconciliation to build: AIS gross receipts (194-O) minus returns and cancellations from platform statement minus marketplace fees minus exempt supplies = net GST taxable turnover. This should match your GSTR-1 totals.

HOW TO FIX JUNE-AUGUST 2025 NIL RETURNS

AMEND GSTR-1 for those months by adding omitted B2C supplies in the current GSTR-1 period. Amendment window closes at EARLIER OF: October 2026 GSTR-1 or date of GSTR-9 filing for FY 2025-26 (deadline December 31, 2026).

For GSTR-3B: report omitted tax under "Tax payable not paid through GSTR-3B" and pay INTEREST AT 18% per annum from the original due date of each month.

HOW TO REPORT IN ITR

Use GST-based net turnover for business income in Schedule BP, NOT the AIS figure. The AIS 194-O amount of Rs 56.26L is your TDS CREDIT against tax liability, not gross income. Income is what your books and invoices show after reconciliation.

For documentation: maintain platform-wise monthly sales reports, return reports, commission statements, and interest payment challan for any scrutiny.

A complete step-by-step reconciliation process for marketplace sellers is at [AIS vs Form 26AS vs TIS reconciliation for ITR filing](https://taxgarden.in/blog/ais-vs-form-26as-vs-tis-itr-prep-guide-ay-2026-27).

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