GST not applicable on security services provided to an educational institutions. Hence You have to generate the bill without GST.
Services provided -
a) by an educational institution to its students, faculty and staff;
b) to an educational institution, by way of,-
i. transportation of students, faculty and staff;
ii. catering, including any mid-day meals scheme sponsored by the Central Government, State Government or Union territory;
iii. security or cleaning or house-keeping services performed in such educational institution;
iv. services relating to admission to, or conduct of examination by, such institution; upto higher secondary:
Provided that nothing contained in entry (b) shall apply to an educational institution other than an institution providing services by way of pre-school education and education up to higher secondary school or equivalent.
GST = Nil