Revised filling of ITR?or simply rectify mistakes u/s139(9)?

 As notice u/s 139(9) was received by assesse by mail 2 days back, assesse found that  apart from those mistakes(to be rectified) some more things were OVER MENTIONED WRONGLY , so he e-filed a REVISED RETURNS ITR-3 , it was accepted by ITR SYSTEM , will it be OK is the main question? had been there a case where ONLY RECTIFICATION is permitted by IT-CPC, REVISED RETURNS of assesse would NOT   have been accepted by CPC system

" NO" ( being not agrreing to above )

a ASSESSE has only one WINDOW to Do so.

either CORRECT -defects pointed out by IT-CPC as RESPONSE  per notice 139(9) or  make  RECALCULATIONS and accordingly REVISE RETURNS and SUBMITT it, 

now IT-CPC may pass final order as per 143(1) on REVISED ITR or may ASK again  ( if found so) to carry  out correction  for DEFECTS in REVISED ITR as per sec139(9)

I have also received the notice under section 139(9) and they asked me to correct and revise the return. When I once again saw the return filed by me, everything was correct. They have given an option to accept the mistake and done accpet the mistake. I did not accept the mistake and simply filled in the remark colomn that I filed the return correctly and I have already offered 50% of my professional income for tax and hence there is no mistake and I need not maintain the books and hence there is no necessity to file a detailed p & l acccount and B/S. and submitted .

I dont know whether any further quiery will come or not?

Regards

srinivasan