Return Invalidated, No reponse to 139(9)

What to do, in this case:
- Return filed for AY 16-17
- Received Notice under 139(9)
- Not responded
- Return showing invalidated, and there is no option active to file return in response to 139(9).

Please suggest what to do. Is filling a new return without any reference to earlier will be ok? or any other response is required.

Thanks.