Invoice Query

Hi Team

i have query that we have raised multiple invoices (17 invoice) to our client in may 2019 and gst also paid for same to govt at the same time. also those invoices uploaded in gstr1 and gst3b filed within the due date. due to some clerical mistake in invoice client has not accepted the invoice but they have paid the invoice amount after deduction of applicable tds for (13 invoices).

for those 17 invoices, client is asking to submit current date invoice.

if we will issue current date invoice to our client. what will be the consequences for gst paid for these invoice in may 2019. can we raise credit note for same and issue fresh invoice? is there will be any legal compliance for penalty kind of ?