Intimation received u/s 143(1)

I have filed my client's IT Salary returns and there was a relief U/S 89. but at the time of filing IT returns I filed it without uploading the Form 10E. Now we have received the Intimation U/S 143(1) where the relief is not allowed and they have send the demand notice with Interest.
Is there any options to upload Form 10E now and to file the revised IT returns.