I didn't get what you are trying to say Mr. Raja Sir
But what sec 234F says is : Net total income of person I.e. after all deductions exceeds 5L then, he shall pay fine of Rs. 10,000 and if net total income of person I.e. after all deduction is below 5L then, he shall pay fine of Rs. 1,000
This means that he shall pay Rs. 1,000 even if he files nil tax returns or with total income below threshold as well.