Query w.r.t. directors remuneration

A Director was appointed for 3 years. The Central Government gave approval of appointment for 3 years but gave approval of payment of remuneration for only 2 years. Now while applying for further approval of remuneration for 1 year it was noted that the effective capital of the Company has become Negative. Will part C of Schedule XIII apply in this case? Part C says to get Prior Approval of Central government. When are we required to apply for Prior approval? The said Company is an Unlisted Company and the Director holds 44% shares in the Company.