query related to itr

i filled a return electronnically n there was a refund for a/y 2008-09 but i recieved a intimation u/s 143(1) for demand of rs. 83000 .since there system is not showing credit of tds ...only salary income there but assesse was not holding pan for financial year 2007-08 n got its pan in jan.09 n then i filled his return what should i do now i m worried as  i went to ito n they are saying that credit must be shown but assesse has already been deducted excess tds out of his salary income........what should i do pls rpli????????