As per entry number 19B of Notification No 21/2019 of CGST Act, 2017, “Services by way of transportation of goods by a vessel from customs station of clearance in India to a place outside India” exempt from GST till 30th September 2020. (So, for this freight, GST not charged by Logistics company)
And if you paid freight to Logistics company for transportation of Goods from your premises to custom station /Port, than GST charged by logistics company, and you can take ITC of same, whether it's CGST/SGST or IGST.
GST on freight for exports by air or ocean is not in operation till 30.09.2020. Refer N.No.21/2019-CT(R) amending sl. nos. 19A and 19B of N. No.12/2017-CT(R)
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