Etds related guidance require

Dear Sir,

Kindly advice me the following: -

Govt offices of WB closed their annual accounts from March to February every year and as per process we file ETDS return for the above period in quarterly basis like March-May(Q1), Jun-Aug(Q2),Sep-Nov(Q3) & Dec-Feb(Q4). Now we have filed Q3 for the period and IT Deptt has issued notice by not capturing tax payment of Sep in 3rd quarter as per last updated FVU.

Now please suggest us a suitable procedure to comply the above.

Advance thanks to all.