Can invoice be revised after filling return

Few months back I billed to a party with 5 items but party didn't accept one item and asked me for a revised invoice. After providing a revised invoice party took entry of the old invoice by mistake. Now when I matched the ledger I found this error. I sold 4 items but the party took 5 items on that invoice. How to resolve this issue now that both of us have already filed the return? Please help.