TDS query

A praciticing charetered accountant has been hired on consultancy basis by a company. TDS @ 10.3% was deducted from his professioanal fees paid monthly to him. Now erronously while furnishing the TDS return by the Company, the accountant clerk in finance dept (not the CA hired ) has shown the TDS on professional fees as TDS on Salary in tDS return as well as challan. Now what should the CA hired on consultancy basis do to rectify the same. Should he approach on his own to income tax dept. (becasue the Comapny is not cooperating) or should he simply file his return simply showing the tax deducted as tds on professional fees. what will be the effects of the same.